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@BGI-shenzhen

hewm2008@bgi

hewm2008‘s software

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  1. PopLDdecay PopLDdecay Public

    PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files

    C++ 211 53

  2. LDBlockShow LDBlockShow Public

    LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files

    Perl 228 44

  3. Reseqtools Reseqtools Public

    A Toolkit for analyzing next-generation DNA Re-Sequencing data

    85 28

  4. VCF2Dis VCF2Dis Public

    VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Format

    C++ 111 22

  5. BamDeal BamDeal Public

    BamDeal: a comprehensive toolkit for bam manipulation

    C++ 55 19

Repositories

Showing 10 of 13 repositories
  • PopLDdecay Public

    PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files

    BGI-shenzhen/PopLDdecay's past year of commit activity
    C++ 211 MIT 53 8 0 Updated Jul 16, 2026
  • VCF2Dis Public

    VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Format

    BGI-shenzhen/VCF2Dis's past year of commit activity
    C++ 111 MIT 22 1 0 Updated Jun 20, 2026
  • LDBlockShow Public

    LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files

    BGI-shenzhen/LDBlockShow's past year of commit activity
    Perl 228 MIT 44 9 1 Updated Jul 5, 2025
  • BamDeal Public

    BamDeal: a comprehensive toolkit for bam manipulation

    BGI-shenzhen/BamDeal's past year of commit activity
    C++ 55 MIT 19 2 1 Updated Dec 21, 2022
  • fqcheck Public Forked from hewm2008/fqcheck

    fqcheck: A new simple and efficient software to stat base and quality distribution of fq file

    BGI-shenzhen/fqcheck's past year of commit activity
    C++ 1 3 0 0 Updated Feb 17, 2022
  • FxTools Public

    FxTools: a comprehensive toolkit for FASTA and FASTQ file manipulation

    BGI-shenzhen/FxTools's past year of commit activity
    C++ 31 MIT 12 2 0 Updated Feb 16, 2022
  • Reseqtools Public

    A Toolkit for analyzing next-generation DNA Re-Sequencing data

    BGI-shenzhen/Reseqtools's past year of commit activity
    85 GPL-2.0 28 3 0 Updated Feb 15, 2022
  • gcaPDA Public

    gamete cell assisted chromosome-scale phased diploid assembler

    BGI-shenzhen/gcaPDA's past year of commit activity
    Perl 5 1 0 0 Updated Mar 26, 2021
  • RRSelection Public

    RRSelection: A linkage disequilibrium method to detect selection region across population VCF

    BGI-shenzhen/RRSelection's past year of commit activity
    C++ 14 MIT 2 0 0 Updated Feb 11, 2019
  • soap2bam Public

    soap2bam: A efficient software tools to convert soap to bam format

    BGI-shenzhen/soap2bam's past year of commit activity
    2 0 0 0 Updated Jun 13, 2018
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