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@GenomicsAotearoa

Genomics Aotearoa

A collaborative research platform for genomics and bioinformatics in Aotearoa New Zealand

Kia ora. Welcome all, this is the GitHub for Genomics Aotearoa, a collaborative research platform for genomics and bioinformatics. The repositories here relate to our in-progress software development for projects and training workshops.

If you are interested in learning more about Genomics Aotearoa, please visit our official website at:

https://www.genomics-aotearoa.org.nz/

If you are interested in learning more about our Genomics Aotearoa Bioinformatics Training Programme, please visit our website here:

https://genomicsaotearoa.github.io/BioinformaticsTrainingProgramme/


We maintain a mix of public and private GitHub repositories, with private repositories only accessible to members of the GA organisation. If you are part of a GA project team, and need to be added to the GA organisation, please contact Mik Black or genomics.aotearoa@otago.ac.nz

GA organisation members can find onboarding and GitHub contribution guidance rendered directly on this page when logged into their GitHub account and are viewing as a 'Member'.

Repositories by topic

Each link below generates a list of GA repositories for that particular topic tag

Training workshops

General Resources

Research projects GA 2.0

  • Projects for GA 2.0 will be underway soon!

Research projects GA 1.0

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  1. metagenomics_summer_school metagenomics_summer_school Public

    Course materials for the Genomics Aotearoa Metagenomics Summer School

    HTML 69 32

  2. methods-and-musings methods-and-musings Public

    A (growing) collection of information contributed by Genomics Aotearoa members. Semi blog post style bites of content.

    9 6

  3. Kakapo Kakapo Public

    Scripts and code for Kākāpō genomic data

    Jupyter Notebook 14 1

  4. BioinformaticsTrainingProgramme BioinformaticsTrainingProgramme Public

    Material for bioinformatics training programme website

    CSS

Repositories

Showing 10 of 78 repositories
  • metagenomics_summer_school Public

    Course materials for the Genomics Aotearoa Metagenomics Summer School

    GenomicsAotearoa/metagenomics_summer_school's past year of commit activity
    HTML 69 GPL-3.0 32 4 0 Updated Sep 25, 2026
  • BioinformaticsTrainingProgramme Public

    Material for bioinformatics training programme website

    GenomicsAotearoa/BioinformaticsTrainingProgramme's past year of commit activity
    CSS 0 0 0 0 Updated Sep 25, 2026
  • GA-instructors-maintainers-guide Public

    A guide for setting-up, developing and maintaining GA workshops, for instructors and maintainers

    GenomicsAotearoa/GA-instructors-maintainers-guide's past year of commit activity
    Lua 0 0 0 0 Updated Sep 24, 2026
  • hts_workshop_mpi Public

    Training materials for the 2025 HTS Plant Health and Environment Laboratory workshop

    GenomicsAotearoa/hts_workshop_mpi's past year of commit activity
    HTML 3 4 0 0 Updated Sep 23, 2026
  • introduction-to-shell Public

    introduction to shell

    GenomicsAotearoa/introduction-to-shell's past year of commit activity
    HTML 0 GPL-3.0 1 7 0 Updated Sep 22, 2026
  • reproducibility_with_git_and_quarto Public

    A two day workshop on reproducibility with Git and Quarto

    GenomicsAotearoa/reproducibility_with_git_and_quarto's past year of commit activity
    JavaScript 2 GPL-3.0 0 0 0 Updated Sep 18, 2026
  • data-manipulation-with-tidyverse Public

    WORK IN PROGRESS. Workshop material on genomic data manipulation with tidyverse tools in R

    GenomicsAotearoa/data-manipulation-with-tidyverse's past year of commit activity
    CSS 0 0 1 0 Updated Sep 10, 2026
  • RNA-seq-data-analysis-workflow-NZ Public

    RNAseq workshop using an NZ endemic wrasse species.

    GenomicsAotearoa/RNA-seq-data-analysis-workflow-NZ's past year of commit activity
    SCSS 1 1 4 0 Updated Sep 7, 2026
  • Introduction-to-R Public

    Introduction to R

    GenomicsAotearoa/Introduction-to-R's past year of commit activity
    3 CC0-1.0 2 1 0 Updated Sep 7, 2026
  • Pangenome-Graphs-Workshop Public

    This repository contains material to construct pangenome graphs for a small bacteria dataset detailing every step in the Nesi environment.

    GenomicsAotearoa/Pangenome-Graphs-Workshop's past year of commit activity
    HTML 11 GPL-2.0 4 9 1 Updated Aug 26, 2026