I build tested, reproducible systems for research and engineering—from phylogenetic software and evolutionary-optimization experiments to host anomaly detection and GitHub repository intelligence.
selected-work/
├── qnode/ [DEPLOYED] repository and pull-request intelligence
├── aspartik/ [UPSTREAM] phylogenetic research software
├── bdsky/ [RESEARCH] phylogenetic tree-prior evaluation
└── hostwatch/ [PROTOTYPE] privacy-aware host anomaly detection
[DEPLOYED] QNode Repository Auditor
GitHub App for repository readiness, pull-request risk, companion-test suggestions, CODEOWNERS coverage, review maps, GitHub Checks, and shareable reports. Run the live scanner.
[UPSTREAM] Aspartik contributions
Rust and Python contributions covering phylogenetic tree models, distance algorithms, Python bindings, NEXUS/Newick parsing, SVG rendering, fixtures, tests, and benchmarks.
[RESEARCH] BDSKY Tree Prior Evaluator
Python implementation of a Birth-Death Skyline tree-prior likelihood with piecewise-constant rates, sampled-tree event modeling, and unit tests.
[PROTOTYPE] ML Host Anomaly Detection
Privacy-aware UEBA prototype using host telemetry, event-derived features, autoencoder scoring, calibrated rules, chronological evaluation, and structured reports.
[OPEN ] kaathewisegit/aspartik #37 Reuse Prüfer storage for random tree parents
[OPEN ] kaathewisegit/aspartik #34 [data] tree/binary: take buffers by value
[MERGED] Kxrma47/qnode-repo-auditor #13 Monitor Docker base image updates
[MERGED] Kxrma47/qnode-repo-auditor #12 Document QNode security assurance case
[MERGED] Kxrma47/qnode-repo-auditor #11 Prepare QNode for OpenSSF Silver criteria
IEEE DCHPC 2026 conference paper on visualizing spatial-data workflows and quantum-inspired candidate stages.
DOI · IEEE Xplore · Scopus · NASA ADS
Indexed in Scopus and the NASA Astrophysics Data System (NASA ADS).
Role-based academic scheduling software with defense windows, polling, voting, authentication, notes, and data export.
$ ls ./more-systems
- Moodle Poll Plugin — academic voting and scheduling with RBAC, CSRF protection, i18n, statistics, and Excel export.
- RNA-seq Analysis — reproducible Snakemake, HISAT2, featureCounts, MultiQC, and DESeq2 workflow.
- SolidJS bModel Visualizer — interactive D3 visualization for phylogenetic model support.
LANGUAGES="Python Rust TypeScript SQL JavaScript C++"
RESEARCH="PyTorch scikit-learn Qiskit DESeq2 DADA2"
SYSTEMS="PostgreSQL Flask Docker RabbitMQ GitHub-Actions"
VISUALS="React SolidJS D3.js"
target research software · machine-learning engineering · open source
status available for collaboration
email mhaque@edu.hse.ru




