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  1. RNAseq_Project RNAseq_Project Public

    Study of pulmonary immune response to Toxoplasma gondii infection through bulk RNA-seq data analysis using data set GSE119855

    R 1

  2. klebgen_Analysis klebgen_Analysis Public

    The KlebGen project is a genomics surveillance initiative focused on Klebsiella Pneumoniae and E. Coli strains isolated from neonates across Africa. This repository contains all the scripts used to…

    R 1

  3. NPHL_Mpox_WGS_Analysis NPHL_Mpox_WGS_Analysis Public

    This repository contains scripts to assist the Cameroon NPHL Bioinformatic Team in analyzing Mpox WGS data for outbreak tracking and characterization.

    Python 1

  4. BactogenMiner BactogenMiner Public

    End-to-end bacterial genomics pipeline from FASTQ QC to sequence typing, AMR, plasmid, and virulence detection, and phylogenetic analysis.

    Nextflow 1

  5. DADA2_Long_reads_Error_Correction_Models_Benchmarks DADA2_Long_reads_Error_Correction_Models_Benchmarks Public

    R 1