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@RomeroLab

Romero Lab

Romero Lab at Duke University

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  1. alphafast alphafast Public

    AlphaFast: ultra-high-throughput AlphaFold3 inference with MMSeqs2-GPU

    Python 166 24

  2. lightning-boltz lightning-boltz Public

    Python 55 1

  3. RLXF RLXF Public

    Consolidated repository to perform RLXF

    Python 49 1

  4. omega omega Public

    OMEGA code described in "Scalable and cost-efficient custom gene library assembly from oligopools."

    Python 45 15

  5. BioDesignBench BioDesignBench Public

    Python 16 3

  6. PRAXIS PRAXIS Public

    Self-driving platform for protein engineering: ML agent + lab-automation environment (paper code).

    Python 12 2

Repositories

Showing 10 of 35 repositories
  • Co-DIRECT Public
    RomeroLab/Co-DIRECT's past year of commit activity
    Python 0 0 0 0 Updated Sep 26, 2026
  • RESOLVE Public
    RomeroLab/RESOLVE's past year of commit activity
    Python 0 0 0 0 Updated Sep 26, 2026
  • pymol-chat Public

    Natural-language and voice control for PyMOL, integrated directly into the native interface.

    RomeroLab/pymol-chat's past year of commit activity
    Python 0 MIT 1 0 0 Updated Sep 23, 2026
  • sadx-latent-function Public

    This repository contains an open-source implementation for generating and prioritizing SadX enzyme variants using typically discarded directed evolution libraries.

    RomeroLab/sadx-latent-function's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 22, 2026
  • megascale-recombination Public

    PETase natural-library recombination: publication analysis, figures, reference sequences, and provenance.

    RomeroLab/megascale-recombination's past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Sep 17, 2026
  • RLXF Public

    Consolidated repository to perform RLXF

    RomeroLab/RLXF's past year of commit activity
    Python 49 Apache-2.0 1 0 0 Updated Sep 14, 2026
  • Multi-objective_enzyme_design Public

    Consolidated repository for multi-objective design of enzymes. We collaborated with boehringer ingelheim to engineer the ketoreductase Gre2.

    RomeroLab/Multi-objective_enzyme_design's past year of commit activity
    Python 4 Apache-2.0 0 0 0 Updated Sep 11, 2026
  • PRAXIS Public

    Self-driving platform for protein engineering: ML agent + lab-automation environment (paper code).

    RomeroLab/PRAXIS's past year of commit activity
    Python 12 Apache-2.0 2 0 0 Updated Aug 17, 2026
  • ml-guided-cannabinoid-biosynthesis Public

    Multi-objective optimization of olivetolic acid cyclase enzyme

    RomeroLab/ml-guided-cannabinoid-biosynthesis's past year of commit activity
    Python 3 Apache-2.0 0 0 0 Updated Jul 16, 2026
  • BioDesignBench Public
    RomeroLab/BioDesignBench's past year of commit activity
    Python 16 Apache-2.0 3 0 0 Updated Jun 24, 2026
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