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@YuLab-SMU

Bioinformatics Group @ SMU

Research group led by Prof. Guangchuang Yu in School of Basic Medical Sciences, Southern Medical University

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The research group has developed a variety of widely recognized bioinformatics tools in the fields of biomedical knowledge mining and knowledge discovery (e.g., clusterProfiler, GOSemSim, DOSE), phylogenetic data integration and visualization (e.g., treeio, ggtree, ggtreeExtra), metagenomic data analysis (e.g., MicrobiotaProcess) and data visualization (e.g., ggbreak, aplot, enrichplot, ChIPseeker), etc., to help biologists explore and understand data.

Links

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  1. clusterProfiler clusterProfiler Public

    πŸ“Š A universal enrichment tool for interpreting omics data

    R 1.2k 267

  2. ggtree ggtree Public

    πŸŽ„Visualization and annotation of phylogenetic trees

    R 934 183

  3. aisdk aisdk Public

    πŸ€– A production-grade framework for building AI-powered applications in R.

    R 76 8

  4. Rho Rho Public

    an agent-native desktop workbench for R

    Rust 33 10

  5. SVP SVP Public

    Spatially Variable Profiler

    R 12

  6. sclet sclet Public

    A State-Aware Single-Cell and Spatial Transcriptomics Toolkit for SingleCellExperiment

    R 24 8

Repositories

Showing 10 of 141 repositories