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@biodatlab

Biomedical and Data Lab at Mahidol University

BioDat Lab, Mahidol University, Thailand

Biomedical and Data Lab @ Mahidol University 👋

  • 💫 Biomedical and Data (BioDat) lab at the Department of Biomedical Engineering, Mahidol University runs by Titipat Achakulvisut, titipata since February 2022.
  • 🍙 Our lab works in an intersection of applied natural language processing, applied machine learning, and science of science (or so called metascience).
  • 🧠 We aim to build tools to make better science and build ML applications for biomedical science.
  • 🌟 (Left) Applied machine learning for biomedical science (Right) Applied machine learning for science of science

       

  • 🤖 This organization repo hosts course materials, lab website, and research happening at the lab.

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  1. icip-challenge-2022 icip-challenge-2022 Public

    Multitask learning via pseudo-label generation and ensemble prediction for parasitic egg cell detection: IEEE ICIP Challenge 2022 (3rd place solution)

    Python 6 1

  2. thonburian-whisper thonburian-whisper Public

    Thonburian Whisper: Open models for fine-tuned Whisper in Thai. Try our demo on Huggingface space:

    Jupyter Notebook 206 21

  3. deep-learning-skooldio deep-learning-skooldio Public

    Deep learning notebooks for Skooldio

    Jupyter Notebook 21 8

  4. multitask-vision-ecg multitask-vision-ecg Public

    MS and LVEF classification for ECG image using multi-task deep learning. Demo website (not included model inference, in Thai) ↓

    Jupyter Notebook 5 4

  5. ec-raft ec-raft Public

    [ACL 2025 findings] EC-RAFT: Automated Generation of Clinical Trial Eligibility Criteria through Retrieval-Augmented Fine-Tuning

    Python 5 1

  6. autoimplantpipe autoimplantpipe Public

    A repository for end-to-end autoimplant pipeline: automatic skull segmentation and autoimplant

    Python 4 1

Repositories

Showing 10 of 36 repositories
  • hands-on-labs Public

    Hands-on Machine Learning Lab for BME students

    biodatlab/hands-on-labs's past year of commit activity
    Jupyter Notebook 0 3 1 0 Updated Sep 4, 2026
  • biodatlab.github.io Public

    Website for Biomedical and Data (Bio-Dat) lab at Mahidol University, Thailand

    biodatlab/biodatlab.github.io's past year of commit activity
    JavaScript 20 MIT 21 0 0 Updated Aug 9, 2026
  • medfuse-seg Public

    [MICCAI 2026] MedFuse-Seg: Multi-Level Visual and Semantic Context Fusion for Segmentation-Based Medical Reasoning

    biodatlab/medfuse-seg's past year of commit activity
    Python 10 Apache-2.0 1 0 0 Updated Jul 7, 2026
  • medexact-lamar Public

    [ACL BioNLP2026] LAMAR at MedExACT 2026: Agreement-Driven Large Language Model Ensembles for Clinical Decision Extraction from Discharge Summaries

    biodatlab/medexact-lamar's past year of commit activity
    Python 1 Apache-2.0 1 0 0 Updated Jul 1, 2026
  • medgenvidqa-lamar Public

    [ACL BioNLP2026] LAMAR-2 at MedGenVidQA@BioNLP2026: Visual Answer Localization in Medical Videos via Multimodal LLM and Context-Augmented Prompting. Shared task website:

    biodatlab/medgenvidqa-lamar's past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Jun 24, 2026
  • kanainet Public

    [MICCAI 2026] KAN-AINet: Kolmogorov-Arnold Network with Adaptive Illumination Modulation for Generalizable Polyp Segmentation

    biodatlab/kanainet's past year of commit activity
    Python 2 Apache-2.0 1 0 0 Updated Jun 19, 2026
  • thonburian-whisper Public

    Thonburian Whisper: Open models for fine-tuned Whisper in Thai. Try our demo on Huggingface space:

    biodatlab/thonburian-whisper's past year of commit activity
    Jupyter Notebook 206 MIT 21 3 0 Updated Apr 2, 2026
  • genai-vibe-example Public

    PRD and Claude.md Example with Claude Code (for Mahidol Harvard Hackathon)

    biodatlab/genai-vibe-example's past year of commit activity
    0 MIT 0 0 0 Updated Mar 23, 2026
  • siriraj-assist Public

    Simple chatbot for Siriraj SIP. This is the demo repository for Mahidol's hackathon

    biodatlab/siriraj-assist's past year of commit activity
    Jupyter Notebook 13 Apache-2.0 3 2 0 Updated Mar 13, 2026
  • community-notebooks Public

    Community notebooks for the Biomedical and Data lab, Mahidol

    biodatlab/community-notebooks's past year of commit activity
    Jupyter Notebook 9 MIT 9 0 0 Updated Mar 2, 2026

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