All pull requests

Pull requests

• perf(enrichments): query alteration-enrichment groups in parallel as …

  #12372·Pradyuman-aviator opened Sep 26, 2026Contributor·

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• fix(study-view): match case lists exactly in the ClickHouse study vie…

  #12371·Pradyuman-aviator opened Sep 26, 2026Contributor·

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• docs: add Data Contributor role to documentation landing page

  #12370·Carleoinserra opened Sep 26, 2026·

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• Add 3.0.1 migration marking status-0 studies available

  #12367·fuzhaoyuan opened Sep 25, 2026Contributor·

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• Fix gene panel matrix study ID prefix removal

  #12363·1sakshm opened Sep 23, 2026Contributor·

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• Migrate to Spring Boot 4.1 / Spring Framework 7 / Spring Security 7

  #12361·alisman opened Sep 23, 2026Contributor·

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• fix(studyview): drop clinical data filters with null or empty values

  bugready to merge
  #12357·Injora opened Sep 23, 2026Contributor·

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• fix : Require authentication to create virtual studies

  #12356·Harsha-CodeWalnut opened Sep 23, 2026·

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• fix: use filteredCounts in Chi-square enrichment test to avoid crash

  #12353·Pradyuman-aviator opened Sep 22, 2026Contributor·

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• Fix encoded proxy paths with a context path

  #12352·1sakshm opened Sep 19, 2026Contributor·

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• Fix study export stable ID prefix removal

  #12351·1sakshm opened Sep 19, 2026Contributor·

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• Add live database switching, without restarting the portal

  #12345·alisman opened Sep 18, 2026Contributor·

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• fix: use BigDecimal.compareTo() instead of equals() for interval filter boundary check

  #12342·Pradyuman-aviator opened Sep 16, 2026Contributor·

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• Make clinical data table pagination deterministic

  #12341·raylim opened Sep 16, 2026·

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• WSI hierarchy and access backend foundation

  #12339·raylim opened Sep 15, 2026·

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• feat(similarity): add patient genomic similarity endpoint (#12332)

  #12334·Pradyuman-aviator opened Sep 7, 2026Contributor·

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• Rebuild derived tables via temp-table swap instead of TRUNCATE

  #12318·fuzhaoyuan opened Aug 27, 2026Contributor·

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• Fix Infinity whisker values in violin plot for categories with no valid numeric data

  #12316·alisman with CopilotAI opened Aug 27, 2026·

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• Enable log scale for all numerical variables in Study View X vs Y chart

  #12313·CopilotAI opened Aug 25, 2026·

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• Feat/embedding api

  #12262·i-am-leslie opened Jul 6, 2026Contributor·

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• (WIP) Resource table v2

  #12237·dippindots opened Jun 22, 2026Collaborator·

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• Feature/generic assay matrix endpoint

  #12133·arnav03op opened May 2, 2026·

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• Fix #11731: Add batched discrete copy number fetch endpoint for multiple profile/sample filters

  #12084·VarshiniGunti opened Apr 6, 2026Contributor·

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• feat: extend OncoTree metadata in database and models (#11993)

  #11997·Annu881 opened Feb 27, 2026·

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• feat(#11967): Enforce API access tokens and secure MDC logging

  #11978·Annu881 opened Feb 20, 2026·

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