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@lrslab

Long Read Sequencing (lrs) lab

The lab page for long read sequencing lab @ City University of Hong Kong

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  1. nanoSundial nanoSundial Public

    A de novo modification detection tool that targets current features based on 004kit for prokaryotes

    Python 22 2

  2. nanoCEM nanoCEM Public

    "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.

    Python 18 2

  3. Hammerhead Hammerhead Public

    This project is designed to find the potential modifications in bacterial genomes.

    Python 15 1

  4. Giraffe_View Giraffe_View Public

    Forked from lxd98/Giraffe_View

    Giraffe_View is designed to help assess and visualize the accuracy of long-read sequencing datasets.

    Python 13

  5. Benchmarking_for_ONT_reads Benchmarking_for_ONT_reads Public

    The codes used to benchmark ONT reads.

    R 4 1

  6. anasfv anasfv Public

    The analysis pipeline for ASFV genome assembly and phylogenetic analysis.

    Python 4 1

Repositories

Showing 10 of 27 repositories
  • trackcluster-rs Public
    lrslab/trackcluster-rs's past year of commit activity
    Rust 4 Apache-2.0 0 0 0 Updated Sep 19, 2026
  • trackclusterTU Public

    Fast interval similarity and scalable clustering for bacterial transcript units (TUs) from mapped long reads.

    lrslab/trackclusterTU's past year of commit activity
    Rust 4 MIT 1 0 0 Updated Sep 10, 2026
  • mtasemotif Public
    lrslab/mtasemotif's past year of commit activity
    Python 2 MIT 0 0 0 Updated Aug 8, 2026
  • SLRanger Public

    Detection tool for operon and spliced leader designed for direct RNA sequencing

    lrslab/SLRanger's past year of commit activity
    Python 4 0 0 0 Updated Jul 13, 2026
  • lrslab.github.io Public
    lrslab/lrslab.github.io's past year of commit activity
    HTML 2 0 0 0 Updated May 16, 2026
  • nanoSundial Public

    A de novo modification detection tool that targets current features based on 004kit for prokaryotes

    lrslab/nanoSundial's past year of commit activity
    Python 22 Apache-2.0 2 1 0 Updated May 16, 2026
  • CN-AML Public

    nanopore whole-genome sequencing of cytogenetically normal acute myeloid leukaemia

    lrslab/CN-AML's past year of commit activity
    R 0 0 0 0 Updated Apr 14, 2026
  • DVG_ONT_scripts Public

    This repository contains a collection of Python and R scripts used for analyzing Nanopore direct RNA sequencing (DRS) data in paper "Unique Production of Abundant Defective Viral Genomes by an Insect-Specific Alphavirus Revealed by Nanopore Sequencing"

    lrslab/DVG_ONT_scripts's past year of commit activity
    R 0 Apache-2.0 1 0 0 Updated Feb 11, 2026
  • benchmark_CycloneSeq Public

    The resource table and links to CycloneSeq data processing

    lrslab/benchmark_CycloneSeq's past year of commit activity
    0 0 1 0 Updated Dec 1, 2025
  • Bacteria-Multisequencing Public

    Open Repository of Scripts and Resources for Nanopore and NGS Sequencing of Eight Bacteria

    lrslab/Bacteria-Multisequencing's past year of commit activity
    Python 0 MIT 0 0 0 Updated Dec 1, 2025
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