All pull requests

Pull requests

• Designate RK.1 as clade 26E

  #1228·trvrb opened Sep 24, 2026Member·

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• Designate RF.5 as clade 26D

  #1227·trvrb opened Sep 24, 2026Member·

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• Designate PQ.16.1.1 as clade 26C

  #1226·trvrb opened Sep 24, 2026Member·

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• Cumulative root-to-node S1 mutation count

  #1223·trvrb opened Aug 2, 2026Member·

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  3

• Remove Nextstrain profiles

  #1197·victorlin opened Mar 24, 2026Member·

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• feat: use nightly nextclade tree

  #1170·ivan-aksamentov opened Jan 28, 2025Member·

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• Add a map of Nextstrain clade to Pango lineage

  #1159·huddlej opened Oct 23, 2024Contributor·

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• Demo prefilter rule for Nextstrain GISAID build

  #1128·huddlej opened Jul 25, 2024Contributor·

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  8

• inline root sequence

  #1111·rneher opened May 30, 2024Member·

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• Document example accepted docker image formats for action

  #1105·victorlin opened May 3, 2024Member·

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• Update Suffolk lat/long

  #1100·joverlee521 opened Feb 27, 2024Contributor·

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• Introduce minimum augur version check

  #1070·jameshadfield opened May 16, 2023Member·

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• Allow specification of container image in workflow rebuild-100k.yml

  #1067·corneliusroemer opened May 5, 2023Member·

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• Allow a list of sequence exclusion files, instead of just one

  #977·sacundim opened Jul 11, 2022·

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• Memory resource definitions

  #953·tsibley opened May 25, 2022Contributor·

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• Fix annotate metadata with numeric strains

  #952·huddlej opened May 25, 2022Contributor·

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• Remove whitespace indents from large Auspice JSONs

  #944·fanninpm opened May 9, 2022Contributor·

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• Fill in more lat/long data from the OpenStreetMap name-to-location API

  #920·jgadling opened Apr 15, 2022Contributor·

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• Add parameter to enable overriding tree args

  #871·huddlej opened Feb 16, 2022Contributor·

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• Remove redundant include strains

  bug
  #843·huddlej opened Jan 25, 2022Contributor·

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• #657 Validate input files from config file

  #821·emontag47 opened Dec 15, 2021·

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• Report Augur versions on error without --use-conda

  #611·huddlej opened Apr 19, 2021Contributor·

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