All pull requests

Pull requests

• Bump pip from 26.1 to 26.2 in /metagraph/api/python

  dependenciespython
  #643·dependabot[bot] opened Sep 1, 2026·

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• README: modernize structure (logo, Quick start, MetaGraph Online)

  #635·karasikov opened May 17, 2026·

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  16

• MADV_WILLNEED prefetching across the query path

  #628·karasikov opened May 3, 2026·

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• Cache results in the metagraph server

  #626·karasikov opened May 2, 2026·

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• Added support for indexing sequence IDs as counts

  #560·karasikov opened Nov 4, 2025·

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• Batch aggregation (two-level batching)

  #522·karasikov opened May 16, 2025·

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  5

• Port row_diff_traverse from DBGSuccinct

  #512·hmusta opened Mar 13, 2025·

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• Option to annotate a representative node from each monochromatic contig

  #500·hmusta opened Oct 2, 2024·

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  1

• Count-based differential assembly

  #487·hmusta opened Jun 11, 2024·

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• Less stringent alignment and seed filtering

  #453·hmusta opened Jun 5, 2023·

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  2

• Support outputting alignments in GAF format

  #384·hmusta opened Feb 7, 2022·

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  4

• implement the taxonomic classification with queries on the annotation matrix

  #347·heracle opened Aug 2, 2021·

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  11

• support for multiple successors at forks

  #329·karasikov opened Jun 16, 2021·

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  8

• mark rd successors only in forks

  #308·karasikov opened Apr 2, 2021·

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• Alignment and query cleanups

  #271·karasikov opened Jan 19, 2021·

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• Lower RAM implementation of slice_columns for BRWT

  #226·hmusta opened Oct 26, 2020·

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  10

• Add checkpointing to metagraph build

  #197·danieldanciu opened Sep 8, 2020·

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  46