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@scipion-em

scipion-em

Official repository for Scipion plugins

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  1. scipion-pyworkflow scipion-pyworkflow Public

    Underlying pyworkflow module for the Scipion framework

    Python 5 9

  2. scipion-em scipion-em Public

    Base Scipion plugin defining objects and protocols for EM

    Python 8 8

  3. scipion-app scipion-app Public

    Base Scipion application that is based on pyworkflow and all extension plugins

    Python 8 4

  4. scipion-installer scipion-installer Public

    Scipion app installer for version 3. Compatible with python2 and python3. It creates virtualenv or conda environments.

    Python 3 4

  5. docs docs Public

    Scipion documentation repository

    Python 1 6

  6. scipion-em-tomo scipion-em-tomo Public

    Base tomography Scipion plugin with data model definition

    Python 9 5

Repositories

Showing 10 of 129 repositories
  • scipion-em-tomo3d Public

    Plugin for the software of Jose Jesus Fernandez

    scipion-em/scipion-em-tomo3d's past year of commit activity
    Python 0 GPL-3.0 0 2 1 Updated Sep 25, 2026
  • scipion-em-aretomo Public

    Plugin to use AreTomo within the Scipion framework

    scipion-em/scipion-em-aretomo's past year of commit activity
    Python 1 GPL-3.0 0 2 2 Updated Sep 25, 2026
  • scipion-em-imod Public

    Plugin to use some of the Tomography tools from IMOD in Scipion

    scipion-em/scipion-em-imod's past year of commit activity
    Python 2 GPL-3.0 2 21 (1 issue needs help) 3 Updated Sep 25, 2026
  • scipion-em-tomo Public

    Base tomography Scipion plugin with data model definition

    scipion-em/scipion-em-tomo's past year of commit activity
    Python 9 GPL-3.0 5 41 (1 issue needs help) 4 Updated Sep 25, 2026
  • scipion-em-facilities Public

    Plugin for Cryo-EM facilities to be used within Scipion framework

    scipion-em/scipion-em-facilities's past year of commit activity
    Python 0 GPL-3.0 1 6 4 Updated Sep 25, 2026
  • scipion-em-miffi Public
    scipion-em/scipion-em-miffi's past year of commit activity
    Python 0 GPL-3.0 1 2 2 Updated Sep 25, 2026
  • scipion-em-gautomatch Public

    Plugin to use Gautomatch program within the Scipion framework

    scipion-em/scipion-em-gautomatch's past year of commit activity
    Python 3 GPL-3.0 0 1 2 Updated Sep 24, 2026
  • scipion-em-fidder Public
    scipion-em/scipion-em-fidder's past year of commit activity
    Python 0 GPL-3.0 0 0 1 Updated Sep 24, 2026
  • scipion-em-cistem Public

    Plugin to use cisTEM programs within the Scipion framework

    scipion-em/scipion-em-cistem's past year of commit activity
    Python 1 GPL-3.0 4 1 2 Updated Sep 23, 2026
  • scipion-em-sphire Public

    Plugin to use Sphire programs within the Scipion framework

    scipion-em/scipion-em-sphire's past year of commit activity
    Python 0 GPL-3.0 1 2 3 Updated Sep 23, 2026
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