bioinformatics-algorithms

Empower Large Language Models (LLM) using Knowledge Graph based Retrieval-Augmented Generation (KG-RAG) for knowledge intensive tasks

Comparison of methods for trajectory inference on single-cell data 🥇

Open-source usearch

A collection of 50+ trajectory inference methods within a common interface 📥📤

Cluster single cells and analyze cell clade relationships with colorful visualizations.

Protein structure alignment and search algorithm

Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

Natural Language Search and Analysis of High Dimensional Genomic Data

Predicting regulatory DNA elements based on epigenomic signatures

I am sharing my code repository to understand the working and principle of working of various BioInformatics code in Python

L1000 peak deconvolution based on Bayesian analysis

Decoding Single-Cell Omics of Perturbation Responses Using DeSCOPE

deMULTIplex2: robust sample demultiplexing for scRNA-seq

Fast and simple algorithms for computing both LCSk and LCSk+

Bioinformatics Guide

This is a curated list of tutorials, projects, libraries, videos, papers, books and anything related to applications of Deep Learning to biomedicine. Feel free to make a pull request to contribute to this list.

Official code repository for JAX-CNV

CONTRAfold-SE - Learning RNA secondary structure (only) from structure probing data