blast-filter

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BTalamantesBecerra / omicR

omicR It creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data). It only works with BLAST V 2.7 or under.

fasta blast fasta-sequences blastn fasta-format dartseq blast-filter

Updated Jul 30, 2024
Python

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