cellrank
Here are 8 public repositories matching this topic...
This repository contains single cell analysis pipelines.
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Nov 16, 2023 - Jupyter Notebook
Single-cell RNA velocity and cell fate trajectory inference pipeline powered by scVelo, CellRank, and AnnData. Calculates directional mRNA splicing dynamics.
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Aug 8, 2026 - Python
A stem-cell differentiation copilot for computational biology teams — CABS 2026 intern project.
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May 24, 2026 - Python
ONGOING STUDY. AFFILIATED WITH TCNHS, REGION XI, PHILIPPINES. MaligPx: A Fate Plasticity Index for Quantifying Cell-State Fate Heterogeneity in Pancreatic Ductal Adenocarcinoma. INQUIRIES: matteogalgo.ph@gmail.com
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Sep 2, 2026 - Python
Streams-and-eddies analysis of single-cell transition operators via a Schur/Koopman decomposition. Alpha.
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Aug 28, 2026 - Python
Geometry-aware analysis of single-cell embeddings and dynamics beyond RNA velocity
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Jul 22, 2026 - Python
Interactive scRNA-seq fate mapping of human hematopoietic stem/progenitor cells using Scanpy, CellRank, GPCCA and Streamlit.
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Sep 12, 2026 - Python
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