Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files
ABIF parser, writer and generator
Sanger Trace Alignment
A repository of data and notebooks for exploring the fungi DNA sequencing data collected.
Comprehensive Sanger sequence analysis and clinical reporting tool. Identifies SNVs and Indels precisely while keeping your genetic data secure locally.
A local API-based biological engine that uses Tracy for sequence alignment and VEP for variant annotation. Built with Python for computational biology and bioinformatics analysis.
autoConTAMPR: Automatic Contingency Table Analysis of Minority Peak Ranks
LC-MS/MS derived peptide retention time deviation calculator across replicates for DDA and DIA derived result files.
ChromaZ is a cross-platform desktop C++/Qt6 application for contig assembly, Sanger sequencing chromatogram visualization, multiple sequence alignment, and bioinformatics analysis of nucleotide and amino acid sequences.
C++ smoothing and baseline estimation/correction library
World-class, high-performance web viewer for Sanger sequencing traces (.ab1/.scf): chromatogram rendering, base calls, quality scores. Client-side, hosted on GitHub Pages.
abi2xml is a command-line tool to convert an ABIF file to an XML file. ABIF files (also called ABI trace files) contain DNA sequence data and are e.g. produced by ABI PRISM TM 377 DNA sequencers. This software is written in C++ and released under the GPL license version 2.
The GUI program was designed to assist an in house developed chromatogram for data collection and data analysis. The developed software can help communicate with the device. I have attached the complete script for the software but most of the machine dependent libraries are there in the IGCAR research lab, so the online mode (data collection fr…
Human Genomics Solutions: auditable Sanger trace QC, consensus, and variant evidence pipeline
Open-source desktop application for Sanger chromatogram visualization, editing, and NCBI BLAST identification
Unofficial reader for MS-DIAL aligned EIC archives
An integrated desktop application, created using PyQt5, used to automate data acquisition and analysis in a CO2 to Ethylene pilot plant
Open-source desktop software for reproducible Sanger sequencing analysis, review, consensus building, alignment, and BLAST workflows.
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