A method for circular DNA detection based on probabilistic mapping of ultrashort reads
🔬 A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data
BioSeq2vec: learning deep representation of biological sequences using LSTM Encoder-Decoder
Repository for the publication "Circular RNA repertoires are associated with evolutionarily young transposable elements" (Gruhl et al 2021. eLife).
CircFusion is a new software tool to detect linear fusions and f-circRNAs from RNA-seq data, both in samples where the fusion breakpoint is known and in a discovery mode. CircFusion can detect chimeric transcripts even in the presence of multiple translocation breakpoints, both for the main and unbalanced reciprocal fusion, which are quite commo…
🐳 Docker image for CirComPara
Bioinformatic identification and quantification of circRNAs encoded by SARS-CoV-2
Assorted scripts in Perl, Bash, R and whatsoever directly from a bioinformatician's scripts/ folder
Manuscript data and code repository
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