Implementation of CycPeptMP, an accurate and efficient model for predicting the membrane permeability of cyclic peptides
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May 10, 2025 - Python
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cyclic-peptides
Here are 9 public repositories matching this topic...
Tool to design cyclic peptides that mimic proteins and target their binding partners.
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Jul 9, 2024 - Jupyter Notebook
Cyclic-peptide - protein complexes benchmark and associated scripts and data
bioinformatics proteins modelling docking structural-bioinformatics utrecht-university cyclic-peptides
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Aug 31, 2024 - Shell
Autonomous cyclization and property-aware design for cyclic peptides.
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Aug 27, 2026 - Python
A large language model for predicting membrane permeability of chemically modified peptides particularly for cyclic peptides. This method will help to discover novel orally deliverable peptide
cyclic-peptides chemical-language-models chemically-modified-peptides membrane-permiability-prediction stacked-ensembble-models
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May 8, 2026 - Jupyter Notebook
Computational programs and algorithms used to convert information from biochemical experiments (DNA/RNA/Protein/DNA chip/NGS) into useful information and data.
markov-chain motif dna fasta mass-spectrometry k-mer genome-analysis peptides de-bruijn-graphs fasta-sequences orf protein-sequence z-score directed-acyclic-graph overlap-graph cyclic-peptides cyclic-pattern
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Jan 28, 2021 - Python
Analyze possible peptide fragments with peptide serum stability studies.
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Apr 17, 2018 - Java
MacroConf Dataset & Workflows to Assess Cyclic Peptide Solution Structures
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Jun 21, 2023 - Jupyter Notebook
Computational pipeline for evaluating cyclic peptide binders to MDM2 using ODesign, Boltz-2, and MM-GBSA. Course materials for CHM696 at Purdue.
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Apr 20, 2026 - Python
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