#

ete3

Here are 13 public repositories matching this topic...

LKremer / CAFE_fig

A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)

evolution phylogenetic-trees gene-families molecular-evolution cafe ete3

Updated Sep 5, 2019
Python

LKremer / showTree

showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.

visualization python phylogenetic-trees phylogenetics gene-families treeview ete3 protein-domains protein-families

Updated Mar 28, 2019
Python

linzhi2013 / taxonomy_ranks

To get taxonomy ranks information with ETE3 Python3 module (http://etetoolkit.org/)

taxonomy ncbi ete3 ranks

Updated Mar 29, 2024
Python

Grelot / global_fish_genetic_diversity

Codes I wrote for the paper : "Global determinants of freshwater and marine fish genetic diversity" Nature Communications, 2020

map data-science r genetics julia-language python3 statistical-analysis data-analysis shapefile spatial-analysis ncbi-taxonomy ecology biodiversity ete3 data-curation bold-database align-sequences

Updated Feb 10, 2020
R

fenryka / org-chart

Organization Chart generator using Python and ETE

python python3 ete3 org-chart

Updated Aug 16, 2023
Python

MuthusaravananS / phylogeny-tree-with-MSA-and-Domain

The script will generate and display the phylogeny tree, with MSA and domain distribution labels assigned to the tree leaves.

python protein-sequences phylogeny msa ete3 pfam

Updated May 22, 2023
Python

wijerasa / ete-build

Phylogenetic tree construction using ETE toolkit

python ete3

Updated May 1, 2018

laelbarlow / sort_seqs_by_clade

Script for sorting FASTA sequences by clade in a given tree topology.

biopython-library ete3 phylogenetic-tree

Updated Jan 14, 2021
Python

BHNtools / dockerEte

Docker images for ETE3.

docker phylogeny ete3

Updated Oct 6, 2017
HTML

thirtysix / Aspatwar.Gsalaris_BCA

python bioinformatics biopython phylogenetics ete3 parasitology carbonic-anhydrase manuscript-analyses

Updated Jul 22, 2026
Python

ResearchIT / ete3

Singularity Recipe for ete3

singularity ete3

Updated Mar 28, 2018
Roff

danschnurp / not-so-swift-compiler

A compiler for the "Not so Swift" programming language that translates source code into PL/0 instructions, featuring variables, functions, loops, conditionals, arrays, and lambda expressions. Built in Python using PLY for lexical/syntactic analysis and ETE3 for syntax tree generation.

swift ply ete3 pl0 pl0-compiler

Updated Jan 20, 2023
Python

SANBI-SA-archive / tree2neo

Tree2neo is a command line tool to import Newick tree (nhx) files to neo4j database

python bioinformatics neo4j fasta py2neo ete3 combattb

Updated Oct 20, 2017
Python

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