MGM (Microbial General Model) as a large-scaled pretrained language model for interpretable microbiome data analysis.
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Jan 26, 2026 - Jupyter Notebook
#
microbiome-model
Here are 9 public repositories matching this topic...
Early Life Microbiome Toolbox
python machine-learning data-analysis microbiome microbiome-analysis anomaly-detection longitudinal-studies microbiome-model longitudinal-analysis microbiome-trajectory microbiome-toolbox
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Dec 20, 2023 - Jupyter Notebook
Ontology-aware neural network (ONN) for microbial community sample source tracking!
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Oct 11, 2022 - Python
📦BEEM-Static: An R package for inferring microbial interactions based on Lotka-Volterra models
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Aug 24, 2021 - R
Agent-based Model of the Human Gut Microbiome
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May 31, 2018 - HTML
Generic code for performing microbiome-wide association studies with a variety of models
visualization machine-learning bioinformatics bioinformatics-analysis microbiome-analysis microbiome-model
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Feb 26, 2018 - R
Visualization of world-class repeated measures microbiome data from the lungs of children with Cystic Fibrosis, with wide-ranging applications to other longitudinal microbiome data.
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Jun 21, 2022 - OpenEdge ABL
Benchmarking DESeq2, MaAsLin2, and ANCOM-BC2 on simulated microbiome data with known differential taxa.
benchmarking bioinformatics r simulation deseq2 microbiome bioinformatics-analysis microbiome-analysis differential-abundance-methods microbiome-data microbiome-model differential-abundance-analysis maaslin2 sparsedossa2 ancombc2
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Aug 27, 2026 - R
Cellular automaton to model intestinal microbiotal population dynamics
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Dec 3, 2017 - Python
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