modeller

Automated omics-scale protein modeling and simulation setup.

An automated pipeline for homology-modeling based on modeller

Simple Modeler for Arknights:Endfield to keep track of production lines

This is a repository of Modeller automation(Linux version), which will help us to develop exclusive codes for Bioinformatics. We are curious Computer Science people, who are exploring Bioinformatics, This project is also a part of that voyage.

AlphaMod's official repository for protein folding

Generating PDB Structure Models via Modeller-Python

Jython/Java extensions processed through IBM/SPSS Modeler

EasyModel: a user-friendly web-based interface based on MODELLER - https://doi.org/10.1038/s41598-023-44505-9

A Python-based comparative modeling workflow using MODELLER to build homology models from a target FASTA and template PDB, with comparison against a Swiss-Model structure.

A graphical modeller for OPC UA information models: NodeSet2 in and out without loss, types in the notation of OPC 10000-3, finite state machines, and a set of rules that checks a model before a server sees it.

Homology modeling of alpha-amylase using bioinformatics tools to predict 3D protein structure and analyze structural features.

Tools for personal use. Feel free to use/modify.

Homology Modelling of the human cryptochrome-1 using mouse cryptochrome-1

ProSutra is an automated pipeline for protein structure prediction, validation, and report generation with CLI, Streamlit, and Electron interfaces.

Coverability graph modeller

Codex Cowork is a Codex-first cowork control plane and specialist-agent plugin.

Assess models previously generated with modeller with the DOPE method

A script to generate a tripeptide database. At present, the amino acids of tripeptides produced are not complete

Bioinformatics Course - Protein Module Practice

A Python script that compares predicted protein structures (AlphaFold2, MODELLER, RoseTTAFold) against an experimental reference for a single target, reporting quality/fit metrics.