nanopore

Oxford Nanopore's Basecaller

Structural variation caller using third generation sequencing

Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly

Neural-network consensus polishing and variant calling for Oxford Nanopore sequencing data

A PyTorch Basecaller for Oxford Nanopore Reads

Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling

Long read / genome alignment software

A curated list of awesome nanopore analysis tools.

Assembly and binning of metagenomes

pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)

A bioinformatics tool for working with modified bases

[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads

PEPPER-Margin-DeepVariant

Reference-guided transcript discovery and quantification for long read RNA-Seq data

A universal toolkit for upstream processing of long RNA reads

A collection of scripts and notes related to genomics and bioinformatics

Nanopore demultiplexing, QC and alignment pipeline

Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

Methylation/modified base calling separated from basecalling.

Pod5: a high performance file format for nanopore reads.