petab

High-performance sensitivity analysis for large ordinary differential equation models

A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existing methodologies for data-based modelling

Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.

Python package for working with PEtab files

Model selection for PEtab

Tool to convert an ODE model specified in the YAML format to SBML.

PEtab visualization tool

A graphical PEtab editor

PEtab test suite

RCGAToolbox is a MATLAB toolbox for parameter estimation of kinetic models.

PEtab --> COPASI importer

Bayesian models for ODE models in the Systems Biology Markup Language (SBML)

Example Scripts for using COPASI simulations in pyABC