phylogenetic

Tools for Phylogenetic Comparative Methods

Phylogenetic tree manipulating with Python

Phylogeny-aware power analysis and sample-size estimation for microbiome community studies (metagenomic and metaproteomic)

Nextflow pipeline for core-genome phylogenetic tree building.

Interactive phylogenetic tree builder. Input DNA/protein sequences, compute pairwise alignments, and visualize evolutionary relationships with step-by-step algorithm replay.

The package areaPD contains functions for calculating phylogenetic diversity (PD) for a set of geographic areas, calculating complementarity PD given a selected area, and drawing a Venn's diagram of PD within and between areas, given a phylogenetic tree and an assignment of samples (e.g., alleles, species, etc.) to areas.

Scripts for Rees et al. 2023. Testing White’s Floristic Impoverishment Hypothesis in the Forest-Savanna Transition Zones of Africa

Interactive visualization of how the world's 7 major language families evolved over 8000 years — Indo-European, Sino-Tibetan, Afro-Asiatic, Niger-Congo, Austronesian, Dravidian, Turkic. 交互式世界语言演变图：印欧、汉藏、闪含七大语系 8000 年。