TrackMate is your buddy for your everyday tracking.
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Aug 28, 2026 - Java
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single-particle-tracking
Here are 14 public repositories matching this topic...
ExTrack MLE for diffusive noisy single-particle tracks
python image-analysis microscopy diffusion spt maximum-likelihood-estimation single-particle-tracking imagej-plugin
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Sep 18, 2026 - Jupyter Notebook
Single Molecule Imaging Simulator with Advanced Fluorophore Photophysics
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Nov 14, 2025 - MATLAB
Python toolkit for 2D single-particle tracking (SPT) and reconstruction of super-resolution images.
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May 20, 2025 - Python
Python toolkit for 2D/3D image processing using CPU or GPU
python gpu registration microscopy deconvolution single-molecule-imaging light-sheet-microcopy single-particle-tracking
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Jul 28, 2026 - Python
FidlTrack platform for improved single-particle tracking fidelity
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Jan 12, 2026 - Jupyter Notebook
A GUI application to assist manual object tracking in 2D/3D time-lapse images
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Jul 28, 2026 - Python
Command line, batch processing for single particle tracking analysis
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Sep 20, 2025 - Python
A napari plugin for TRAIT2D, a software for quantitative analysis of single particle diffusion data
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Aug 11, 2022 - Python
Matlab software for simulation of two-dimensional single particle tracking (SPT) data sets.
single-molecule simulation diffusion single-molecule-imaging single-particle-tracking oligomerization single-molecule-localization
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May 16, 2024 - MATLAB
GPyTool, a Bayesian framework developed to estimate the diffusive properties of a stochastic time trajectory
python bayesian-inference single-particle-tracking stochastic-data biophysical-modeling diffusion-probabilistic-models
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Mar 29, 2025 - Jupyter Notebook
Open-source toolkit for structure-informed analysis of molecular trajectories and trapping in dynamic amorphous porous media, with molecular-dynamics preprocessing, Bayesian inference, synthetic benchmarks, and pore-network statistics.
python molecular-dynamics molecular-simulation computational-physics bayesian-inference trajectory-analysis porous-media methane kerogen subdiffusion gas-transport single-particle-tracking anomalous-diffusion nanoporous-materials anomalous-transport molecular-trapping pore-network-modeling
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Sep 19, 2026 - Python
A comprehensive, modular application for analyzing particle trajectories from TIRF microscopy recordings and other single-molecule imaging data.
python image-analysis microscopy diffusion particle-tracking bioimage-analysis single-molecule-imaging single-particle-tracking
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Aug 5, 2026 - Python
FLIKA fork extended for SMLM, single-particle tracking, and calcium imaging
python image-analysis pyqt calcium-imaging microscopy flika bioimage-analysis smlm single-particle-tracking
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May 17, 2026 - Python
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