Transposon Insertion Finder - Detection of new TE insertions in NGS data
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Updated
May 20, 2025 - Perl
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somatic-indels
Here are 6 public repositories matching this topic...
A long-read somatic phasing software for tumor-only sequencing
bioinformatics somatic-variants tumor haplotypes somatic-mutations copy-number-variation nanopore-sequencing long-read-sequencing somatic-indels tumor-purity-estimation loss-of-heterozygosity
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Sep 20, 2026 - C
A long-read somatic phasing software for tumor-normal paired sequencing
bioinformatics somatic-variants haplotypes somatic-mutations nanopore-sequencing long-read-sequencing somatic-indels tumor-purity-estimation
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Aug 5, 2026 - C
Transposable Element Finder - Detection of active transposable elements from NGS data
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Apr 14, 2026 - Perl
A Platypus-based workflow for indel calling
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Jul 29, 2024 - Python
Snakemake Pipeline for the Analyses of ChIP-seq data in Cancer samples
somatic-variants mutation gatk mutations chip-seq somatic-mutations normalization mutation-analysis copynumber macs chip-seq-callers macs2 chipseq somatic-indels gatk4 chip-seq-data chip-seq-analysis chip-seq-peaks somatic-variant
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Jul 5, 2026 - Python
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