tractography

Multi-platform, free open source software for visualization and image computing.

⚠️ OBSOLETE | Multi-platform, free open source software for visualization and image computing.

DIPY is the paragon 3D/4D+ medical imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

Graph theory analysis of brain MRI data

A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning

MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit

Easy and comprehensive assessment of predictive power, with support for neuroimaging features

Diffusion MRI analysis and visualization in 3D Slicer open source medical imaging platform.

White matter tractography clustering and more...

Processing and visualization tools for quantitative MRI data

Method for encoding brain connectomes in multidimensional arrays (tensors).

A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://www.biorxiv.org/content/10.1101/2021.10.20.465189v1 A video tutorial on PyDesigner and its usage is now available at https://www.youtube.com/watch?v=mChQFuQqX3k

Magnetic resonance imaging and tractography with R

ORG Fiber Clustering White Matter Atlas

This repository contains the code of UtiliziNg tRActography to uncoVEr muLti-fixel microstructure (UNRAVEL).

FOD-Net: A Deep Learning Method for Fiber Orientation Distribution Angular Super Resolution

Public release of Track-to-Learn: A general framework for tractography with deep reinforcement learning

Introduction to dMRI

A Python-based interactive tool for virtual dissection and manual refinement of diffusion MRI tractography. Supports .trk, .tck, .trx, .vtk, .vtp formats with streamline selection-deletion, ROI drawing, FreeSurfer parcellation, and whole-brain visualization.