#
vizgen
Here are 4 public repositories matching this topic...
Efficiently parse transcripts metadata from the detected_transcripts.csv file generated by Vizgen MERFISH pipeline.
-
Updated
Nov 11, 2025 - Rust
Pre-processing script for Vizgen MERFISH data
-
Updated
Feb 18, 2026 - Jupyter Notebook
A snakemake pipeline to perform cell segmentation on MERFISH spatial transcriptomics data.
cell-segmentation watershed-algorithm single-cell-rna-seq spatial-transcriptomics merfish cellpose vizgen vizgen-postprocessing
-
Updated
Aug 28, 2026 - Python
Add this topic to your repo
To associate your repository with the vizgen topic, visit your repo's landing page and select "manage topics."