Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
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Apr 17, 2026 - Python
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linked-reads
Here are 18 public repositories matching this topic...
⛓ Correct misassemblies using linked AND long reads
bioinformatics genome-assembly genome-scaffolding 10xgenomics misassembly-correction linked-reads bioinformatics-tool
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Mar 24, 2026 - Python
Process linked-read data, from raw sequences to phased haplotypes, batteries included. Works with WGS too!
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Sep 17, 2026 - Python
⛓️ Construct a Physical Map from Linked Reads
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Apr 1, 2026 - Python
ChromeQC: Summarize sequencing library quality of 10x Genomics Chromium linked reads
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Apr 30, 2019 - HTML
Collection of tools and resources for linked-reads
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Jun 26, 2026
Fake genomes, fake sequencing, real insights.
simulator simulation genome-assembly dna-sequences paired-end long-reads dna-sequencing dna-assembly linked-reads
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Sep 4, 2021 - Julia
Standalone tool and library allowing to work with barcoded linked-reads
bioinformatics barcode index linked barcodes reads 10x 10x-genomics 10xgenomics linked-reads stlfr haplotagging tell-seq
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Dec 7, 2024 - C++
Linked-reads based structural variant caller with barcode indexing
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Dec 7, 2024 - C++
MTG-Link: Local assembly tool for linked-read data
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May 30, 2026 - Python
De novo assembly pipeline for 10X linked-reads using Supernova
workflow pipeline nextflow genome-assembly denovo-assembly 10x-genomics 10xgenomics supernova linked-reads nf-core
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Sep 15, 2020 - Nextflow
A software providing reference-free barcode deconvolution for linked reads data
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Jul 2, 2024 - C++
Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules
bioinformatics genome-assembly bioinformatics-analysis genome-scaffolding 10xgenomics misassembly-correction linked-reads
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Sep 18, 2018 - Makefile
Pan-genomics of C difficile with linked-read technollgy
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Jul 29, 2025 - Python
Linked-read sequence simulator
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Sep 1, 2026 - Julia
Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules
bioinformatics manuscript genome-assembly genome-scaffolding 10xgenomics misassembly-correction linked-reads
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Nov 29, 2018 - TeX
Tigmint: Correct Misassemblies Using Linked Reads From Large Molecules
genome assembly chromium scaffolding 10x mitochondrion abyss misassembly-correction linked-reads gymnosperm
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Sep 4, 2020 - JavaScript
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